PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1177s0007.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 200aa    MW: 22383 Da    PI: 6.9362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1177s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-182272155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr++  ++rWv+e+r+p   +k+ r++lg++ tae+Aa+a++ a+++++g
  Kalax.1177s0007.1.p 22 PVYRGVRRRN-SNRWVCEVREP---NKKNRIWLGTYPTAEMAARAHDVAALAFRG 72
                         68*****888.8******9998...3369**********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-142272IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-202382IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-302382IPR001471AP2/ERF domain
PROSITE profilePS5103222.0492380IPR001471AP2/ERF domain
SMARTSM003805.1E-252386IPR001471AP2/ERF domain
CDDcd000181.31E-272482No hitNo description
PRINTSPR003671.3E-72435IPR001471AP2/ERF domain
PRINTSPR003671.3E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MLASSHPKKR AGRKKFRETR HPVYRGVRRR NSNRWVCEVR EPNKKNRIWL GTYPTAEMAA  60
RAHDVAALAF RGLKSCLNFA DSAWRLPVPA STDAADIQRA AAEAAEMFRT PEDTDNLNKG  120
NIVCTMGEAS SGNNKDEPNR QTQQGTSYYV DEEAIFDMPG LLNNMAEGLL LPPPSFLDGE  180
FTWDNAENDT DLTLWNHSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255545.16e-87PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9SYS67e-71DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLA9PL439e-85A9PL43_POPTR; C-repeat binding facor 1
TrEMBLV9PCH85e-84V9PCH8_POPEU; C-repeat binding factor 4b
STRINGPOPTR_0012s13870.14e-83(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-64C-repeat/DRE binding factor 1